PDF ( 3 ) - Journal of Microbiology and Infectious Diseases
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PDF ( 3 ) - Journal of Microbiology and Infectious Diseases
o o f Micr f S ur JMID as na l g y and I n u s Di se AT ION S OCI ATIO olo t io TIG AS bi es HEALTH INV ec of ES N I Jo JOURNAL of MICROBIOLOGY and INFECTIOUS DISEASES pISSN 2146-3158 eISSN 2146-9369 Volume 3 Issue 4 December 2013 Publishes four times a year Association of Health Investigations Abbreviation for citation: J Microbiol Infect Dis Open Access: www.jmidonline.org J Microbiol Infect Dis www.jmidonline.org Vol 3, No 4, December 2013 II J Microbiol Infect Dis www.jmidonline.org Vol 3, No 4, December 2013 JOURNAL of MICROBIOLOGY and INFECTIOUS DISEASES III Print ISSN 2146-3158 Online ISSN 2146-9369 Editor-in-Chief Salih Hoşoğlu, Türkiye Associate Editors Ejaz Khan, Pakistan Reşat Özaras, Türkiye Nazif Elaldı, Türkiye Oğuz Karabay, Türkiye M. Faruk Geyik, Türkiye Editorial Board Metin Aytekin, USA Saim Dayan, Türkiye Murat Günaydın, Türkiye Hakan Leblebicioğlu, Türkiye Recep Öztürk, Türkiye Contact Person Prof.Dr. Saim Dayan, Dicle University, Medical Faculty, Department of Microbiology and Infectious Diseases Diyarbakır- Türkiye Phone: +90-412 248 80 01 / 4737 and +90-412 248 84 73 Fax: +90-412- 248 84 40 Email: jmid@jmidonline.org Web Address: www.jmidonline.org Journal of Microbiology and Infectious Diseases (JMID) is a peer-reviewed medical journal and published four times a year (March, June, September and December). JMID is indexed/abstracted in EBSCO, DOAJ, CrossRef, Index Copernicus, Google Scholar and Turk Medline Copyright © Journal of Microbiology and Infectious Diseases 2013, All rights reserved Publishing Date: December 2013 Subscription fee: 100 TL (60 $) Address for requests: Prof.Dr. Salih Hoşoğlu, Dicle University, Medical Faculty, Department of Microbiology and Infectious Diseases, 21280 Diyarbakır - Türkiye Printing M MEDİSAN Medisan Yayınevi Ltd.Şti. Çankırı Cad. 45 / 347 Ulus - Ankara, Türkiye 00 57, Email: medisanyayinevi@gmail.com J Microbiol Infect Dis Tel : +90 312 311 24 26 – 311 www.jmidonline.org Vol 3, No 4, December 2013 IV JMID - Reviewers of Volume 3 ADVISORY BOARD Abdul Gafur, Chennai, India Mustafa Kasım Karahocagil, Van, Turkey Ainura Kutmanova, Bishkek, Kyrgyzstan Mustafa Kemal Çelen, Diyarbakır, Turkey Amra Adrovic, Sarajevo, Bosnia&Herzegovina Mustafa Sünbül, Samsun, Turkey Aukse Mickiene, Kaunas, Lithuania Nagwa Khamis, Cairo, Egypt Ayten Kadanalı, Istanbul, Turkey Nuri Kiraz, İstanbul, Turkey Bojana Beovic, Ljubljana, Slovenia Oğuz Reşat Sipahi, İzmir, Turkey Biljana Carevic, Belgrade, Serbia Omar Bagasra, Orangeburg, SC, USA Canan Agalar, Istanbul, Turkey Ömer Faruk Kökoğlu, Kahramanmaraş, Turkey Ejaz Khan, Islamabad, Pakistan Padman Jayaratne, Hamilton, ON, Canada Emine Alp, Kayseri, Turkey Ramin Bayramov, Baku, Azerbaijan Emin Maden, Konya, Turkey Regine Hakenbeck, Kaiserslautern, Germany Hakan Erdem, Istanbul, Turkey Sead Ahmetagic, Sarajevo, Bosnia&Herzegovina Haluk Vahaboğlu, Kocaeli, Turkey Serpil Erol, Erzurum, Turkey Halil Kurt, Ankara, Turkey Shahana Urooj Kazmi, Karachi, Pakistan Hanan Balky, Riyadh, Saudi Arabia Shaheen Mehtar, Cape Town, South Africa Hasan Uçmak, Kahramanmaraş, Turkey Sibel Gündeş, Kocaeli, Turkey Hürrem Bodur, Ankara, Turkey Souha S. Kanj, Beirut, Lebanon İbrahim Çağatay Acuner, İstanbul, Turkey Süleyman Yazar, Kayseri, Turkey İftihar Köksal, Trabzon, Turkey Şaban Esen, Samsun, Turkey İlhan Özgüneş, Eskişehir, Turkey Şükran Köse, İzmir, Turkey Jakhongir Alidjanov, Tashkent, Uzbekistan Tuna Demirdal, Afyon, Turkey Mehmet Doğanay, Kayseri, Turkey Üner Kayabaş, Malatya, Turkey Mehmet Özden, Elazığ, Turkey Vedat Turhan, Istanbul, Turkey Mehmet Parlak, Erzurum, Turkey Vincent T.K. Chow, Singapore Meltem Işıkgöz Taşbakan, İzmir, Turkey Yasmin A. Malik, Kuala Lumpur, Malaysia Michael L. Tapper, New York, USA Zülal Özkurt, Erzurum, Turkey Mira Niyazalieva, Bishkek, Kyrgyzstan J Microbiol Infect Dis www.jmidonline.org Vol 3, No 4, December 2013 V JMID - Reviewers of Volume 3 Acknowledgement Journal of Microbiology and Infectious Diseases thanks to the following reviewers for their contributions during 2013: Abdul Ghafur, Chennai, India Hayati Demiraslan, Kayseri, Turkey Ahmad Khaldun Ismail, Kuala Lumpur, Malaysia Hava Yılmaz, Samsun, Turkey Ahmet Karakaş, Ankara, Turkey Husnu Pullukcu, İzmir, Turkey Ali Acar, Istanbul, Turkey Hüseyin Şener Barut, Tokat, Turkey Ali Hussein Almarzoqi, Al Hillah, Iraq Ibrahim Akkurt, Sivas, Turkey Alper Şener, Çanakkale, Turkey Ismail Yaşar Avcı, Ankara, Turkey Amra Adroviç, Sarajevo, Bosnia & Herzegovina Javier Pemán, Valencia, Spain Andrew Whitelaw, Tygerberg, S. Africa Joel Mossong, Luxemburg, Luxemburg Anil Chander, Kathmandu, Nepal Mehmet Doğanay, Kayseri, Turkey Annalise E. Zemlin, Tygerberg, S. Africa Mehmet Faruk Geyik, Düzce, Turkey Arindam Chakraborty, Mangalore, India Meltem Taşbakan, İzmir, Turkey Asuman Özkan, Istanbul, Turkey Mesut Yilmaz, Istanbul, Turkey Atıfet Yasemin Oztop, Sivas, Turkey Mohammad Rafiqul Islam, Dhaka, Bangladesh Atalay Şahin, Diyarbakır, Turkey Murat Dizbay, Ankara, Turkey Atilla Senih Mayda, Düzce, Turkey Mustafa Sünbül, Samsun, Turkey Ayşe Erbay, Yozgat, Turkey Mustafa Gokhan Gozel, Sivas, Turkey Ayse Ertürk, Rize, Turkey Nazif Elaldi, Sivas, Turkey Aziz Öğütlü, Sakarya, Turkey Nguyen Thai Son, Hanoi, Vietnam Bahri Teker, Istanbul, Turkey Nuri Özkütük, Manisa, Turkey Bansidhar Tarai, New Delhi, India Oğuz Karabay, Sakarya, Turkey Banu Sancak, Ankara, Turkey Özgür Günal, Tokat, Turkey Birgul Kacmaz, Ankara, Turkey Ömer Coşkun, Ankara, Turkey Cemal Üstün, Bolu, Turkey Ömer Faruk Kökoğlu, Kahramanmaraş, Turkey Çiğdem Banu Çetin, Manisa, Turkey Ömer Tamer Doğan, Sivas, Turkey Dra Graciela Castro Escarpulli, Hidalgo, Mexico Güllü İştar Dolapçı, Ankara Ebubekir Şenateş, Diyarbakir, Turkey Reşat Özaras, Istanbul, Turkey Ejaz Khan, Islamabad, Pakistan Saim Dayan, Diyarbakir, Turkey Emin Maden, Konya, Turkey Salih Hosoglu, Diyarbakir, Turkey Eric Nulens, Nijmegen, the Nederlands Şebnem Şenol, Manisa, Turkey Ertuğrul Güçlü, Sakarya, Turkey Salih Cesur, Ankara, Turkey Esra Kocoglu, Bolu, Turkey Serdal Korkmaz, Sivas, Turkey Farshid Fayyaz Jahani, Urumiye, Iran Serhat Birengel, Ankara, Turkey Gurdal Yılmaz, Trabzon, Turkey Süleyman Yazar, Kayseri, Turkey Haluk Vahaboğlu, İstanbul, Turkey Tuna Demirdal, İzmir, Turkey Harris Manzoor Khan, Aligarh, India Thayumanavan Thangavelu, Coimbatore, India Hasan Uçmak, Kahramanmaraş, Turkey Zülal Özkurt, Erzurum, Turkey Hayrettin Akdeniz, Bolu, Turkey Zeliha Kocak Tufan, Ankara, Turkey J Microbiol Infect Dis www.jmidonline.org Vol 3, No 4, December 2013 VI JMID - Instructions for Authors INSTRUCTIONS FOR AUTHORS All manuscripts should be prepared as appropriate for Uniform Requirements for manuscripts submitted to Biomedical Journals (http://www.icmje.org/). All submitted manuscripts must be contributed solely to Journal of Microbiology and Infectious Diseases not be under consideration for publication elsewhere. A copyright transfer statement must be signed by all authors and accompany each submission. Ethical Considerations Manuscripts submitted for publication must contain a statement indicated that all prospective human studies have been approved by the ethics Committee, have therefore been performed in accordance with the ethical standards of 2008 Declaration of Helsinki. It should also be clearly stated that all persons gave informed consent prior to their inclusion in the study. Studies involving animals must have the animal ethics committee approval and be conducted in accordance with the care and use of laboratory animals standards. Copyright agreement All submitted materials become the property of Journal of Microbiology and Infectious Diseases. If a submission is accepted for publication, authors will sign a copyright transfer agreement. Copyright transfer agreement signed by all authors can be send to the Journal through email in a PDF file or via fax. Transfer agreement form should be sent to Publication office just after the acceptance of the manuscript. The publisher reserves the copyright. Materials published in Journal of Microbiology and Infectious Diseases may not be reproduced or published elsewhere without written permission of the Publisher. Manuscript preparation Manuscripts should be arranged in the following order; Title page, Abstracts, Key words, Introduction, Materials and Methods, Results, Discussion, Acknowledgements, References, Tables, Figure Legends, Figures. All of these sections should run consecutively. The use of subheads is encouraged. Journal of Microbiology and Infectious Diseases will consider the publication of manuscripts dealing with clinical or laboratory investigations, including original investigations, case reports, invited reviews and letter to editors in the broad field of Medicine. Animal or in vitro research will also be considered. All manuscripts are subjected to peer-review. Manuscripts should be written in English. Title page: The title page should not contain abbreviations. The title page should contain the full names and affiliations of all authors and complete contact information (including address, phone number, fax number, email) of the corresponding author. Abstract: An abstract of no more than 250 words in length, describing the aims, the results that were obtained from presented data and the conclusions. Abstract should be written in a structured manner including Objectives, Materials and methods, Results and Conclusions subheadings. Key words: Up to five key words should be supplied following the abstract. The key words should reflect the central topic of the article and should be in compatible with Medical Subject Headings (MeSH). References: References should be numbered consecutively in order of their appearance in the text and listed in numerical order. Journal titles should be abbreviated according to Index J Microbiol Infect Dis Medicus. The name of all authors should be written in the References, if six or less authors exist, and the first three authors and et al. should be given if the number of authors exceeds six. References with correct punctuation should be as follows: Journals - Anderson NJ, Abbott GD, Mogridge N, Allan RB, Maling TM, Wells E. Vesicoureteric reflux in the newborn: relationship to fetal renal pelvic diameter. Pediatr Nephrol 1997;11:610-616. - Dunne FP, Elliot P, Gammage MD, et al. Cardiovascular function and glucocorticoid replacement in patients with hypopituitarism. Clin Endocrinol 1995;43:629-632. Books Hatch DJ, Sumner E, Hellman J. The Surgical Neonate: Anaesthesia and Intensive Care, 3rd edn. London: Edward Arnold, 1994:120-5. Chapter in a book: Motoyama EK. Respiratory physiology in infants and children. In: Motoyama EK, Davis PJ, eds. Smith’s Anesthesia for Infants and Children, 5th edn. St. Louis: C.V. Mosby, 1990:11-76. A paper published online but not (yet) in print can be cited using the Digital Object Identifier (DOI). Tables and illustrations: Tables must be self-explanatory and must not duplicate information in the text. Each table must have a title and should be numbered in order of appearance in the text. Any symbol and abbreviations used in the table body must be defined in a footnote to the table. All figures and pictures should be sent in JPG (or JPEG) file format as separate files. Front page, Abstract, Main text, References and Tables should be incorporated in one document file and submitted as a single file. Pictures and figures should be submitted as separate files for each picture and figure. All manuscripts should be submitted by online submission at using login Author Pathway / Online Submission at www. jcmid.org Journal of Microbiology and Infectious Diseases Copyright Transfer Agreement The author(s) hereby affirms that the manuscript entitled: ...... ............................................................................................................................ .. to be published in Journal of Microbiology and Infectious Diseases is original, that all statements as facts are based on author(s) investigation and research, that the manuscript does not, in whole or in part, violate any copyright or any law of privacy or other personal or property right. The manuscript has not been published elsewhere in total or in part; is not being submitted and/or considered for publication in total or in part elsewhere; and that the author(s) has full authority to enter into this copyright agreement and to make the grants contained herein. In signing this form, each author acknowledges that he/she participated in the work in a substantive way and is prepared to take public responsibility for the work. Please sign in the same order in which the authors’ names appear on the title page of manuscript. Author’s name ...................... Signature ........... Date: ..... Author’s name ...................... Signature ........... Date: ..... Author’s name ...................... Signature ........... Date: ..... Author’s name ...................... Signature ........... Date: ..... Author’s name ...................... Signature ........... Date: ..... www.jmidonline.org Vol 3, No 4, December 2013 VII CONTENTS RESEARCH ARTICLE • Expression of ESBL, MBL and AmpC β lactamases by extra intestinal Escherichia coli isolates: correlation with treatment and clinical outcome Arindam Chakraborty, Prabha Adhikari, Shalini Shenoy, Shrikala Baliga, Satish Rao, Dhanashree Biranthabail, Vishwas Saralaya........................................................................................................................................................................................................................150 • Risk factors for nosocomial Acinetobacter bacteremia: a case-control study of intensive care unit patients Özlem Tunger, Gönül Keleş, Şebnem Şenol S, Çiğdem Banu Çetin, Horu Gazi, Sümeyra Çoban S, İlkay Aras, Melek Çivi..... 157 • Impact of appropriate antimicrobial therapy on survival in patients with Acinetobacter baumannii-associated infections Yury Gorbich, Igor Karpov, Olga Kretchikova ...............................................................................................................................................163 • Resistance patterns and trends of extensively drug-resistant tuberculosis: 5-year experience Amresh Kumar Singh, Anand Kumar Maurya, Manoj Kumar, Surya Kant, Ram Awadh Singh Kushwaha, Vijaya Lakshmi Nag, Tapan N. Dhole...............................................................................................................................................................................................169 • Results of Entecavir treatment in patients with chronic hepatitis B Şükran Köse, Melda Türken, Bengü Gireniz Tatar........................................................................................................................................176 • Feco-orally transmitted viral hepatitis in a tertiary care hospital in urban India Monika Rajani, Manoj Jais....................................................................................................................................................................................181 • The incidence of fungal keratitis in Zagazig University Hospitals, Egypt and the value of direct microscopy and PCR technique in rapid diagnosis Reham Mohamed EL Shabrawy, Nissreen El Sayed El Badawy, Ashraf Wasfy Harb.......................................................................186 • Investigation of the Prevalence of vanA and vanB genes in vancomycin resistant enterococcus (VRE) by Taq Man real time PCR Assay Bahman Mirzaei, Taghi Naserpoor Farivar, Puran Juhari, Masume Aslani Mehr, Reyhane Babaei............................................192 • Frequency of active HCV infection among anti-HCV positive patients in selected districts of Khyber Pakhtunkhwa, Pakistan Sajid Ali, Bashir Ahmad, Ijaz Ali, Nourin Mahmood....................................................................................................................................199 BRIEF REPORT • In-vitro susceptibility of linezolid against methicillin resistant Staphylococcus aureus at a tertiary care hospital in Pakistan Ali Khalid, Javaid Usman, Umaira Faiz, Fatima Kaleem, Afreenish Hassan, Maria Omair.............................................................203 • Prevalence of carbapenem resistant Enterobacteriaceae from a tertiary care hospital in Mumbai, India Pravin K. Nair, Michelle S Vaz..............................................................................................................................................................................207 CASE REPORT • Spontaneous recovery of haemophagocytic syndrome in an adolescent girl receiving anti-tuberculosis treatment Ramesh Bhat Yellanthoor, Annamma Kurien , Shruti Kakkar, MS Padma, Vamsi Sivarama Raju, Sherin George ..............211 • Cutaneous anthrax cases leading compartment syndrome Emine Parlak, Ali Aydın, Mehmet Parlak.........................................................................................................................................................214 • Chronic osteomyelitis of skull associated with necrotic injury after trauma: A case report Şua Sümer, Mehtap Karameşe, Ender Köktekir, Onur Ural.......................................................................................................................218 LETTER TO EDITOR • Left retroperitoneal hydatid cyst disease and the treatment approach Alper Avcı, Serkan Bayıl, Recep Tekin...............................................................................................................................................................222 J Microbiol Infect Dis www.jmidonline.org Vol 3, No 4, December 2013